bam2rpkm: generating rpkmvalues from SAM and BAM files


Downloads

Precompiled executables and source code can be downloaded from the SourceForge download page.

The latest source code can be downloaded with:
svn checkout http://svn.code.sf.net/p/bam2rpkm/code/trunk bam2rpkm

Usage and system requirements

for example:

java -jar bam2rpkm-0.6.jar -i <bam file> -f <gtf feature file>


References

  1. SAM/BAM format: http://samtools.sourceforge.net/
  2. Picard API: http://picard.sourceforge.net/


Contact: nestornotabilis@users.sourceforge.net